PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM02G10770.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 481aa    MW: 52248.3 Da    PI: 9.8849
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM02G10770.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.61.8e-51101411128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                      +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+e+d++k+ePwdL+   ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+
  OGLUM02G10770.1  10 VPPGFRFHPTDEELLYYYLRKKVAYEAIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQEEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKA 102
                      69****************************.9***************943444442456*********************************** PP

              NAM  92 vlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++    +g+ +gl+ktLvfy+grap+g+ktdW+mheyrl
  OGLUM02G10770.1 103 IFLGsgGGTRIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 141
                      **98778888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-588161IPR003441NAC domain
PROSITE profilePS5100558.39610161IPR003441NAC domain
PfamPF023652.3E-2711141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MHPNGAPLAV PPGFRFHPTD EELLYYYLRK KVAYEAIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQEEWY FFSHKDKKYP TGTRTNRATA AGFWKATGRD KAIFLGSGGG TRIGLRKTLV  120
FYTGRAPHGK KTDWIMHEYR LDDDNVDVPE EGWVVCRVFK KKSIHQRGFD QPDMAAAADE  180
DELRYQLLHG AGMSSSPVDQ KHVLLQEQLV AHGAHGGGFV VPAFDASMHL PQLASADAAP  240
CGGGGGGHVA VASMNPLDAA GCGSQNMMTM KMAATSGGEM LLMSGGGVDG GRFGAAADWS  300
ILDKLLASHQ NLDQLFHGKV AGAHQQQQQM AMDAASSLQR LPFHHYLGLE AADLLKNPRS  360
LQFSIHSDPV HSQSPTVQSQ TESHRRTIPH LLIGRRRRGA KPLSPPRCGA KPPPPPGPIA  420
SSPSRHIAAV GATHAGSAAP HRLLAPSRAT SPPPGQANQR RRRGAPSPPR LPHRQAPRFD  480
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-50816715171NO APICAL MERISTEM PROTEIN
1ut4_B5e-50816715171NO APICAL MERISTEM PROTEIN
1ut7_A5e-50816715171NO APICAL MERISTEM PROTEIN
1ut7_B5e-50816715171NO APICAL MERISTEM PROTEIN
4dul_A5e-50816715171NAC domain-containing protein 19
4dul_B5e-50816715171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385397RTIPHLLIGRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639430.0AK063943.1 Oryza sativa Japonica Group cDNA clone:001-123-E07, full insert sequence.
GenBankAK1012800.0AK101280.1 Oryza sativa Japonica Group cDNA clone:J033033C18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624882.10.0PREDICTED: NAC domain-containing protein 76-like
SwissprotQ5Z6B61e-108NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A0D9YPZ50.0A0A0D9YPZ5_9ORYZ; Uncharacterized protein
STRINGORGLA02G0097800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.34e-84NAC family protein